The Protein Man's Blog | A Discussion of Protein Research

Protein instability rarely announces itself with obvious warning signs. A sample that appears homogeneous after purification may show visible aggregation overnight; an enzymatic assay that previously yielded reproducible results may yield inconsistent kinetics; aliquots subjected to repeated freeze-thaw cycles may exhibit progressive loss of biological activity. In such cases, the buffer system formulation is the underlying cause — yet it remains among the last variables scrutinized during troubleshooting.

Buffer formulation should be addressed as a primary experimental variable once core experimental parameters are established. Approaching it systematically and deliberately has measurable consequences for protein behavior across purification workflows, storage conditions, and downstream functional applications.

Western blotting or immunoblotting is an indispensable technique, almost every published paper in area of molecular cell biology uses western blotting for detecting specific proteins in a sample of tissue homogenate or cell lysates. Western blotting combines resolving power of polyacrylamide gel electrophoresis (PAGE) or SDS-PAGE and specificity of antibodies to detect target proteins.  Proteins are resolved on the basis of their molecular weight in SDS-PAGE and transferred from the polyacrylamide gel onto the membranes (Nitrocellulose or PVDF), which creates an exact replica of the protein separation pattern on the membrane. After transferring the proteins to the membrane, the membrane needs ‘blocking’ to ‘block’ non-specific binding sites on the surface of the membrane. Blocking is usually performed with Bovine Serum Albumin, Skimmed milk or purified milk Casein.

Evolution of ancient cellular components paves a path to parasitic adaptations in Apicomplexan parasites.